Troubleshooting guide: Why is there black on my pepper plant?

Pepper plants are a popular choice for gardeners, offering a variety of flavors and colors. However, blackening on pepper plants can be alarming and may indicate a range of issues, from natural coloration to more severe conditions that could impact the plant’s health.

This guide will help you understand the different causes of blackening on pepper plants and provide solutions to address them effectively.

Causes of blackening on pepper plants

Understanding the causes of blackening on your pepper plant is essential for maintaining its health. Blackening can occur due to natural factors, environmental stress, or disease. Identifying the specific cause is the first step in addressing the problem and ensuring the continued growth and productivity of your pepper plants.

1. Pepper fruit is turning black

When pepper fruit begins to turn black, it can be due to several reasons. Some are natural, while others require attention.

Natural coloration

Some pepper varieties naturally turn black as they ripen. For example, jalapeños may transition from green to a very dark color that appears black before finally turning red. Other varieties, like black pearl and purple jalapeños, have dark purple or black fruit as a natural characteristic. If the fruit remains firm and healthy despite the color change, there is usually no cause for concern.

Sunscald

Sunscald occurs when pepper fruit is exposed to excessive sunlight, leading to blackening or discoloration on the fruit’s surface. In severe cases, the skin may soften, making the fruit susceptible to mold. To prevent sunscald, use a shade cloth with up to 50% shade coverage to protect your plants from intense sunlight, especially during the hottest part of the day.

Blossom end rot

If the bottom of your pepper fruit turns black and becomes mushy, it may be due to blossom end rot, a condition often related to issues with calcium uptake. Contrary to popular belief, blossom end rot is not usually caused by a lack of calcium in the soil. Instead, it is often linked to inconsistent watering or soil pH imbalances. To prevent blossom end rot, water your plants consistently, avoid overwatering, and maintain a balanced soil pH, ideally neutral to slightly acidic.

2. Blackening of leaves

The blackening of leaves on pepper plants can indicate several issues, ranging from environmental factors to disease.

Overwatering or excessive moisture 

Blackened leaves can result from overwatering or prolonged exposure to moisture. Watering plants from above and allowing the leaves to stay wet for extended periods can lead to this issue. Heavy rainfall or high humidity can also contribute. To prevent this, water your plants appropriately, allowing the soil to dry slightly between watering sessions. Adjust your watering technique to avoid wetting the leaves and ensure adequate drainage.

Cercospora leaf spot

Cercospora leaf spot is a fungal disease that causes dark brown spots with lighter gray centers on the leaves. If you notice these spots, it is likely due to this disease. Remove any infected foliage promptly to prevent the spread. If your plants are in pots, consider separating infected plants from healthy ones to avoid further contamination. Crop rotation can also help reduce the risk of Cercospora leaf spot in future growing seasons.

Overfertilization

Excessive fertilization can stress pepper plants, leading to blackened leaves. If you suspect overfertilization, pause fertilization for a few weeks to allow the plants to recover. Reassess your fertilizer regimen and use a balanced fertilizer at the recommended strength.

Natural dark foliage 

Some pepper varieties naturally have dark or black foliage. Examples include black pearl peppers and black olive peppers. If your plant’s leaves are healthy but dark in color, it is likely a natural characteristic of the variety and not a cause for concern.

3. Black streaks on the stem, nodes on the stems are black

Black streaks on the stem or blackened nodes can occur in some pepper varieties and are not always a sign of disease.

Natural coloration

In certain pepper varieties, such as bell peppers or purple cayenne, it is normal for the stems to develop dark purple or black streaks. The nodes (the points where leaves and branches attach to the stem) may also appear darkened. If the rest of your plant is healthy, there is usually no need for concern. These dark streaks are natural and do not indicate any underlying health issues.

If you notice black streaks on the stem or nodes of your pepper plant, there may not be a cause for alarm. In some cases, such as with bell peppers or purple cayenne, it is natural for the stems to develop dark purple or black streaks and the nodes to exhibit a darkened color. As long as the rest of your plant appears healthy, there is usually no reason to be concerned.

Fusarium Wilt

However, if blackened nodes or streaks are accompanied by other symptoms like black, mushy fruit, yellowing, or wilting leaves, it may indicate Fusarium wilt, a soil-borne fungal disease. Fusarium wilt is challenging to manage once it infects a plant, and there is no known cure. The best approach is prevention through crop rotation and planting resistant varieties. If Fusarium wilt is present, remove and destroy the infected plants to prevent the disease from spreading. For potted plants, discard the soil and sterilize the containers before replanting.

4. Black nodes and other symptoms

Blackening at the nodes or joints of your pepper plant, especially when accompanied by symptoms like black, mushy fruit, yellowing, and wilting leaves, may indicate Fusarium wilt. Fusarium wilt is a fungal disease that is soil-borne, making it difficult to manage and eradicate. This disease can persist in the soil for several years, posing a significant risk to nightshade plants such as peppers, tomatoes, eggplants, and tomatillos.

Tomato plant with fusarium wilt
Tomato plant with fusarium wilt. Image credit: F.D. Richards (CC BY-SA 2.0)

Unfortunately, there is currently no effective cure for Fusarium wilt. If you suspect your plant is affected and there is still time in the growing season, it may be best to remove the infected plant and replace it with new pepper starts planted in a different, unaffected area. For future planting seasons, it is advisable to choose pepper varieties that are resistant to Fusarium wilt and avoid planting in the same area where the disease has been present.

If your pepper plants are grown in pots or grow bags, it’s essential to discard the contaminated soil and thoroughly sterilize the containers before replanting. This step is crucial to prevent the disease from lingering and potentially infecting future crops.

Fusarium wilt is a severe concern for pepper plants and other nightshade crops. Taking proactive measures to avoid further spread and selecting resistant varieties are essential steps in managing the disease and preserving the health of your plants.

Black ring around the stem

A black ring around the stem may be a sign of Phytophthora blight, a serious fungal disease.

Phytophthora Blight

pepper plants that are wilted and dried because they have blight
Wilted pepper plants infected with blight

Phytophthora blight can cause dark lesions on the stem near the soil, which may spread to the leaves and fruit. The disease disrupts the plant’s ability to transport water and nutrients, leading to wilting and yellowing of the plant. Preventing Phytophthora blight is crucial, as there is no known cure once a plant is infected. Implement crop rotation and avoid overwatering or overhead watering, which can promote the development of blight. Early detection and prevention are key to protecting your plants from this destructive disease.


Blackening on pepper plants can be a sign of various issues, ranging from natural coloration to serious diseases like Fusarium wilt and Phytophthora blight. Understanding the potential causes is essential for diagnosing the problem and taking appropriate action to protect your plants. Regular monitoring, proper watering practices, and disease prevention strategies such as crop rotation are crucial for maintaining the health of your pepper plants.

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